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1

THE NEW VIEW OF ANIMAL PHYLOGENY

Halanych, Kenneth M.

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2004

Language:

english

File:

PDF, 430 KB

english, 2004

2

Evolution of Sulfur Binding by Hemoglobin in Siboglinidae (Annelida) with Special Reference to Bone-Eating Worms,Osedax

Waits, Damien S., Santos, Scott R., Thornhill, Daniel J., Li, Yuanning, Halanych, Kenneth M.

Journal:

Journal of Molecular Evolution

Year:

2016

Language:

english

File:

PDF, 1.49 MB

english, 2016

3

The New View of Animal Phylogeny

Kenneth M. Halanych

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2004

Language:

english

File:

PDF, 3.83 MB

english, 2004

4

Invertebrate Zoology: A Functional Evolutionary Approach; Invertebrates; Lousy Lists; Phylogeny in the Comfort Zone;

Halanych, Kenneth, Siddall, Mark, Smith, Vincent, Penny, David

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 48 KB

english, 2004

5

Error, signal, and the placement of Ctenophora sister to all other animals

Whelan, Nathan V., Kocot, Kevin M., Moroz, Leonid L., Halanych, Kenneth M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 897 KB

english, 2015

6

Multiple introns in a deep-sea Annelid (Decemunciger: Ampharetidae) mitochondrial genome

Bernardino, Angelo F., Li, Yuanning, Smith, Craig R., Halanych, Kenneth M.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

7

Ctenophore relationships and their placement as the sister group to all other animals

Whelan, Nathan V., Kocot, Kevin M., Moroz, Tatiana P., Mukherjee, Krishanu, Williams, Peter, Paulay, Gustav, Moroz, Leonid L., Halanych, Kenneth M.

Journal:

Nature Ecology & Evolution

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

8

Challenging Dogma Concerning Biogeographic Patterns of Antarctica and the Southern Ocean

Halanych, Kenneth M., Mahon, Andrew R.

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2018

Language:

english

File:

PDF, 3.70 MB

english, 2018

9

Phylogenetic analysis with multiple markers indicates repeated loss of the adult medusa stage in Campanulariidae (Hydrozoa, Cnidaria)

Annette F. Govindarajan, Ferdinando Boero, Kenneth M. Halanych

Journal:

Molecular Phylogenetics and Evolution

Year:

2006

Language:

english

File:

PDF, 925 KB

english, 2006

10

Phylogeny of Eunicida (Annelida) and Exploring Data Congruence Using a Partition Addition Bootstrap Alteration (PABA) Approach

Purschke, Günter, Halanych, Kenneth, Struck, Torsten

Journal:

Systematic Biology

Year:

2006

Language:

english

File:

PDF, 2.68 MB

english, 2006

11

Testing biological control of colonization by vestimentiferan tubeworms at deep-sea hydrothermal vents (East Pacific Rise, 9°50′N)

Heather L. Hunt, Anna Metaxas, Robert M. Jennings, Kenneth M. Halanych, Lauren S. Mullineaux

Journal:

Deep Sea Research Part I: Oceanographic Research Papers

Year:

2004

Language:

english

File:

PDF, 266 KB

english, 2004

12

Phylogenetic information from three mitochondrial genomes of Terebelliformia (Annelida) worms and duplication of the methionine tRNA

Min Zhong, Torsten H. Struck, Kenneth M. Halanych

Journal:

Year:

2008

Language:

english

File:

PDF, 1.76 MB

english, 2008

13

Rapid evolution of the compact and unusual mitochondrial genome in the ctenophore, Pleurobrachia bachei

Andrea B. Kohn, Mathew R. Citarella, Kevin M. Kocot, Yelena V. Bobkova, Kenneth M. Halanych, Leonid L. Moroz

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 382 KB

english, 2012

14

Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida)

Li, Yuanning, Kocot, Kevin M., Schander, Christoffer, Santos, Scott R., Thornhill, Daniel J., Halanych, Kenneth M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

15

Genome size estimates for Aplacophora, Polyplacophora and Scaphopoda: small solenogasters and sizeable scaphopods: Table 1.

Kocot, Kevin M., Jeffery, Nicholas W., Mulligan, Kelly, Halanych, Kenneth M., Gregory, T. Ryan

Journal:

Journal of Molluscan Studies

Year:

2015

Language:

english

File:

PDF, 146 KB

english, 2015

16

Regional differentiation and extensive hybridization between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx

Dietz, Lars, Arango, Claudia P., Dömel, Jana S., Halanych, Kenneth M., Harder, Avril M., Held, Christoph, Mahon, Andrew R., Mayer, Christoph, Melzer, Roland R., Rouse, Greg W., Weis, Andrea, Wilson, N

Journal:

Royal Society Open Science

Year:

2015

Language:

english

File:

PDF, 2.31 MB

english, 2015

17

Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods

Li, Yuanning, Kocot, Kevin M., Whelan, Nathan V., Santos, Scott R., Waits, Damien S., Thornhill, Daniel J., Halanych, Kenneth M.

Journal:

Zoologica Scripta

Year:

2016

Language:

english

File:

PDF, 760 KB

english, 2016

18

Phylogenomics offers resolution of major tunicate relationships

Kocot, Kevin M., Tassia, Michael G., Halanych, Kenneth M., Swalla, Billie J.

Journal:

Molecular Phylogenetics and Evolution

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

19

A new genus and species of turtle blood fluke (Digenea: Schistosomatoidea) from the Mekong snail-eating turtle, Malayemys subtrijuga (Schlegel & Müller) (Testudines: Geoemydidae) in Vietnam, with a reassessment of related Asiatic turtle blood flukes and molecular phylogeny

Roberts, Jackson R., Arias, Cova R., Halanych, Kenneth M., Dang, Binh T., Bullard, Stephen A.

Journal:

Systematic Parasitology

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

20

Mitogenomics reveals phylogenetic relationships of caudofoveate aplacophoran molluscs

Mikkelsen, Nina T., Kocot, Kevin M., Halanych, Kenneth M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2018

Language:

english

File:

PDF, 2.07 MB

english, 2018

21

A new species of xylophylic fireworm (Annelida: Amphinomidae: Cryptonome ) from deep-sea wood falls in the SW Atlantic

Barroso, Rômulo, Kudenov, Jerry D., Halanych, Kenneth M., Saeedi, Hanieh, Sumida, Paulo Y.G., Bernardino, Angelo F.

Journal:

Deep Sea Research Part I: Oceanographic Research Papers

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

22

The Global Diversity of Hemichordata

Tassia, Michael G., Cannon, Johanna T., Konikoff, Charlotte E., Shenkar, Noa, Halanych, Kenneth M., Swalla, Billie J., Hejnol, Andreas

Journal:

Year:

2016

Language:

english

File:

PDF, 2.08 MB

english, 2016

23

Conservation of mitochondrial genome arrangements in brittle stars (Echinodermata, Ophiuroidea)

Galaska, Matthew P., Li, Yuanning, Kocot, Kevin M., Mahon, Andrew R., Halanych, Kenneth M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2018

Language:

english

File:

PDF, 859 KB

english, 2018

24

Life in wood: preliminary phylogeny of deep-sea wood-boring bivalves (Xylophagaidae), with descriptions of three new genera and one new species

Voight, Janet R, Marshall, Bruce A, Judge, Jenna, Halanych, Kenneth M, Li, Yuanning, Bernardino, Angelo F, Grewe, Felix, Maddox, J Dylan

Journal:

Journal of Molluscan Studies

Year:

2019

File:

PDF, 1.26 MB

2019

25

Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size

Kong, Lingfeng, Li, Yuanning, Kocot, Kevin M., Yang, Yi, Qi, Lu, Li, Qi, Halanych, Kenneth M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2020

File:

PDF, 2.80 MB

2020

26

The Phylogenetic Position of the Pterobranch Hemichordates Based on 18S rDNA Sequence Data

Kenneth M. Halanych

Journal:

Molecular Phylogenetics and Evolution

Year:

1995

File:

PDF, 480 KB

1995

27

Phylogenetic Relationships of Cottontails (Sylvilagus,Lagomorpha): Congruence of 12S rDNA and Cytogenetic Data

Kenneth M. Halanych, Terence J. Robinson

Journal:

Molecular Phylogenetics and Evolution

Year:

1997

Language:

english

File:

PDF, 124 KB

english, 1997

28

Miocene Radiation of Deep-Sea Hydrothermal Vent Shrimp (Caridea: Bresiliidae): Evidence from Mitochondrial Cytochrome Oxidase Subunit I

Timothy M. Shank, Michael B. Black, Kenneth M. Halanych, Richard A. Lutz, Robert C. Vrijenhoek

Journal:

Molecular Phylogenetics and Evolution

Year:

1999

Language:

english

File:

PDF, 191 KB

english, 1999

29

Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences

Yale J. Passamaneck, Christoffer Schander, Kenneth M. Halanych

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 1.65 MB

english, 2004

30

Dinophilidae (Annelida) is most likely not a progenetic Eunicida: Evidence from 18S and 28S rDNA

Torsten H. Struck, Kenneth M. Halanych, Günter Purschke

Journal:

Molecular Phylogenetics and Evolution

Year:

2005

Language:

english

File:

PDF, 197 KB

english, 2005

31

Lophotrochozoan phylogeny assessed with LSU and SSU data: Evidence of lophophorate polyphyly

Yale Passamaneck, Kenneth M. Halanych

Journal:

Molecular Phylogenetics and Evolution

Year:

2006

Language:

english

File:

PDF, 326 KB

english, 2006

32

Detecting possibly saturated positions in 18S and 28S sequences and their influence on phylogenetic reconstruction of Annelida (Lophotrochozoa)

Torsten H. Struck, Maximilian P. Nesnidal, Günter Purschke, Kenneth M. Halanych

Journal:

Molecular Phylogenetics and Evolution

Year:

2008

Language:

english

File:

PDF, 2.29 MB

english, 2008

33

Molecular phylogeny of hemichordata, with updated status of deep-sea enteropneusts

Johanna T. Cannon, Amanda L. Rychel, Heather Eccleston, Kenneth M. Halanych, Billie J. Swalla

Journal:

Molecular Phylogenetics and Evolution

Year:

2009

Language:

english

File:

PDF, 363 KB

english, 2009

34

Phylogeny of the bristle worm family Eunicidae (Eunicida, Annelida) and the phylogenetic utility of noncongruent 16S, COI and 18S in combined analyses

Joana Zanol, Kenneth M. Halanych, Torsten H. Struck, Kristian Fauchald

Journal:

Molecular Phylogenetics and Evolution

Year:

2010

Language:

english

File:

PDF, 2.65 MB

english, 2010

35

Test of the monophyly of Odostomiinae and Turbonilliinae (Gastropoda, Heterobranchia, Pyramidellidae) based on 16S mtDNA sequences

Christoffer Schander, Kenneth M. Halanych, Thomas Dahlgren, Per Sundberg

Journal:

Zoologica Scripta

Year:

2003

Language:

english

File:

PDF, 491 KB

english, 2003

36

Multiple Substitutions Affect the Phylogenetic Utility of Cytochromeband 12S rDNA Data: Examining a Rapid Radiation in Leporid (Lagomorpha) Evolution

Kenneth M. Halanych, Terence J. Robinson

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 681 KB

english, 1999

37

Phylogeography of the Antarctic planktotrophic brittle starOphionotus victoriaereveals genetic structure inconsistent with early life history

Rebecca L. Hunter, Kenneth M. Halanych

Journal:

Year:

2010

Language:

english

File:

PDF, 611 KB

english, 2010

38

DNA uncovers Antarctic nemertean biodiversity and exposes a decades-old cold case of asymmetric inventory

Andrew R. Mahon, Daniel J. Thornhill, Jon L. Norenburg, Kenneth M. Halanych

Journal:

Year:

2010

Language:

english

File:

PDF, 642 KB

english, 2010

39

Evolutionary history of Southern OceanOdontastersea star species (Odontasteridae; Asteroidea)

Alexis M. Janosik, Andrew R. Mahon, Kenneth M. Halanych

Journal:

Year:

2011

Language:

english

File:

PDF, 454 KB

english, 2011

40

Erratum to: Evolutionary history of Southern OceanOdontastersea star species (Odontasteridae; Asteroidea)

Alexis M. Janosik, Andrew R. Mahon, Kenneth M. Halanych

Journal:

Year:

2012

Language:

english

File:

PDF, 120 KB

english, 2012

41

Molecular phylogeny of siboglinid annelids (a.k.a. pogonophorans): a review

Kenneth M. Halanych

Journal:

Year:

2005

Language:

english

File:

PDF, 315 KB

english, 2005

42

Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea: Lineidae)

DANIEL J. THORNHILL, ANDREW R. MAHON, JON L. NORENBURG, KENNETH M. HALANYCH

Journal:

Molecular Ecology

Year:

2008

Language:

english

File:

PDF, 416 KB

english, 2008

43

Ocean barriers and glaciation: evidence for explosive radiation of mitochondrial lineages in the Antarctic sea slug Doris kerguelenensis (Mollusca, Nudibranchia)

NERIDA G. WILSON, M. SCHRÖDL, KENNETH M. HALANYCH

Journal:

Molecular Ecology

Year:

2009

Language:

english

File:

PDF, 880 KB

english, 2009

44

Toward a mechanistic understanding of larval dispersal: insights from genomic fingerprinting of the deep-sea hydrothermal vent tubeworm Riftia pachyptila

Timothy M. Shank, Kenneth M. Halanych

Journal:

Year:

2007

Language:

english

File:

PDF, 598 KB

english, 2007

45

Origins of holopelagic Typhloscolecidae and Lopadorhynchidae within Phyllodocidae (Phyllodocida, Annelida)

Torsten H. Struck, Kenneth M. Halanych

Journal:

Zoologica Scripta

Year:

2010

Language:

english

File:

PDF, 383 KB

english, 2010

46

Range shifts and species diversity in marine ecosystem engineers: patterns and predictions for European sedimentary habitats

Sarah K. Berke, Andrew R. Mahon, Fernando P. Lima, Kenneth M. Halanych, David S. Wethey, Sarah A. Woodin

Journal:

Global Ecology and Biogeography

Year:

2010

Language:

english

File:

PDF, 797 KB

english, 2010

47

Evidence from Hox genes that bryozoans are lophotrochozoans

Yale J. Passamaneck, Kenneth M. Halanych

Journal:

Evolution & Development

Year:

2004

Language:

english

File:

PDF, 143 KB

english, 2004

48

Phylogeography and reproductive variation of the poecilogonous polychaete Boccardiaproboscidea (Annelida: Spionidae) along the West Coast of North America

Fernanda X. Oyarzun, Andrew R. Mahon, Billie J. Swalla, Kenneth M. Halanych

Journal:

Evolution & Development

Year:

2011

Language:

english

File:

PDF, 977 KB

english, 2011

49

Species boundaries and global biogeography of the Alexandrium tamarense complex (Dinophyceae)

Emily L. Lilly, Kenneth M. Halanych, Donald M. Anderson

Journal:

Journal of Phycology

Year:

2007

Language:

english

File:

PDF, 699 KB

english, 2007

50

Annelid phylogeny and the status of Sipuncula and Echiura

Torsten H Struck, Nancy Schult, Tiffany Kusen, Emily Hickman, Christoph Bleidorn, Damhnait McHugh, Kenneth M Halanych

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 376 KB

english, 2007